This is a Java application used to display SNPs in a genetic context.
Editor: AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.

Features
Display SNPs and their p-values in a genetic context, Similar to usual genome browsers
Automatically download supplementary information from Ensembl/Biomart
Display Hapmap LD plots (currently coming from CEU population)
Create reports (made of one or several regions of Interest), which can be reloaded later
Print and export the display to various data formats
Import external data file such as BED or Wiggle as supplementary tracks
Does not require to have a local copy of any data or data source, except for the primary file of SNPs and their respective p-values
Users can scroll and browse through their data in real time
Small in size (AssociationViewer itself is less than 500 KB, less than 5 MB with the required libraries) you can free download AssociationViewer 2.0 now.